Rick,
I think you misunderstood my first suggestion, that is how to do it in PHP.
Put this code into a page called run_query.php3 :
<?
$cnx = mysql_connect('localhost','username','password');
mysql_select_db("database",$cnx);
mysql_query(" ## MYSQL QUERY GOES HERE ## ") or die (mysql_error());
?>
Every time you wanted to run the script just open the page in you browser.
If you need to change the query slightly just change it in the PHP file and open it in you browser.
Regards
Mike
www.digitalegg.net