You can not do so in the creation of tables in mysql. You have to define the tables with the relationships in mind and remember these when you are performing queries.
Hence if I had a Person table with the following columns:
PersonID
Name
Address
And another JoinEP table:
PersonID
EmployeeID
And another Employee table:
EmployeeID
Wage
Now say if you wanted to query the tables to discover the names of people with wages over 20,000.
Select name from Person, JoinEP, Employee where Person.PersonID = JoinEP.PersonID and JoinEP.EmployeeID = Employee.Employee.ID and wage > 20000;
Because of the fact that you can not state relationships within MySql this means that you can not ensure the database integrety and hence care must be taken to ensure that this is the case within the code.