Nope, I'm still here ;o)
magic_quotes_runtime is set to off in my php.ini so that's not it.
I've never been able to pinpoint the cause of this problem.
It also started to affect large strings of text which were posted from a form as well.
I'd written a large CMS to run our website, and when text over a certain length (I can't remember the exact length right now) was posted, it would get garbled, and part of the text would be duplicated at the end of the string, or the string would be truncated, etc.
I tried replicating the problem on other servers with no success. Files uploaded fine, very, very large text strings were posted with no problem whatsoever.
This might be one which never gets figured out, but if anyone comes across this post and has any other ideas please let me know!
Cheers,
Pablo