Well,
It's possible she might be worried about newline handling if she's going from a .txt document on windows to running the script on mysql command line in *nix.
Either way, I would recommend some other replacements for Notepad.
Look into TexEdit, Ultra-Edit32, and others. If you're a windows user, look for them at www.download.com. Both offer syntax highlighting that you can download and install into the editor, making SQL highlighting (and PHP, C++, Perl, Python and many others!) very easy.
Reuben Stump